Path probability ratios for Langevin dynamics—Exact and approximate

نویسندگان

چکیده

Path reweighting is a principally exact method to estimate dynamic properties from biased simulations—provided that the path probability ratio matches stochastic integrator used in simulation. Previously reported ratios match Euler–Maruyama scheme for overdamped Langevin dynamics. Since molecular dynamics simulations use rather than dynamics, this severely impedes application of methods. Here, we derive ML propagated by variant Leapfrog integrator. This new allows We also show previously derived approximate Mapprox differs only O(?4?t4) and thus yields highly accurate results. (?t integration time step, ? collision rate.) The results are tested, efficiency explored using butane as an example.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Extension of Path Probability Method to Approximate Inference over Time

There has been a tremendous growth in publicly available digital video footage over the past decade. This has necessitated the development of new techniques in computer vision geared towards efficient analysis, storage and retrieval of such data. Many midlevel computer vision tasks such as segmentation, object detection, tracking, etc. involve an inference problem based on the video data availa...

متن کامل

Probability density function method for Langevin equations with colored noise.

Understanding the mesoscopic behavior of dynamical systems described by Langevin equations with colored noise is a fundamental challenge in a variety of fields. We propose a new approach to derive closed-form equations for joint and marginal probability density functions of state variables. This approach is based on a so-called large-eddy-diffusivity closure and can be used to model a wide clas...

متن کامل

Generalized Langevin equations: Anomalous diffusion and probability distributions.

We study the motion of a particle governed by a generalized Langevin equation. We show that, when no fluctuation-dissipation relation holds, the long-time behavior of the particle may be from stationary to superdiffusive, along with subdiffusive and diffusive. When the random force is Gaussian, we derive the exact equations for the joint and marginal probability density functions for the positi...

متن کامل

Shortest Path Problem with Gamma Probability Distribution Arc Length

We propose a dynamic program to find the shortest path in a network having gamma probability distributions as arc lengths. Two operators of sum and comparison need to be adapted for the proposed dynamic program. Convolution approach is used to sum two gamma probability distributions being employed in the dynamic program.

متن کامل

Path-Fault-Tolerant Approximate Shortest-Path Trees

Let G = (V,E) be an n-nodes non-negatively real-weighted undirected graph. In this paper we show how to enrich a single-source shortest-path tree (SPT) of G with a sparse set of auxiliary edges selected from E, in order to create a structure which tolerates effectively a path failure in the SPT. This consists of a simultaneous fault of a set F of at most f adjacent edges along a shortest path e...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Journal of Chemical Physics

سال: 2021

ISSN: ['1520-9032', '1089-7690', '0021-9606']

DOI: https://doi.org/10.1063/5.0038408